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Mirdeep

Mirdeep

Name: Mirdeep

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Language: English

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4 Dec miRDeep and its varieties are widely used to quantify known and novel micro RNA (miRNA) from small RNA sequencing (RNAseq). This article  INTRODUCTION - MATERIALS AND METHODS - RESULTS - DISCUSSION. 30 Apr Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. () miRDeep*: an integrated application tool for miRNA identification from RNA. MiRDeep and its varieties are widely used to quantify known and novel miRNA from small RNA sequencing. This paper describes miRDeep*, our integrated.

There are several miRNA identification tools for animals such as miRDeep, miRDeep2 and miRDeep*. miRDeep-P was developed to identify plant miRNA using. 1 Apr miRDeep, our publicly available software package, can be used to solve this problem at least in part. Importantly, it also includes stringent  Main - Results - Discussion - Methods. MiRDeep*, mirDeep and mirDeep2 are based on the same algorithms even though all of them are different. And there is just one paper which I found on.

An integrated application tool for miRNA identification from RNA sequencing data . These sequences will not influence the miRDeep scoring, but will subsequently make it easy to estimate sensitivity of the run. -b Output progress to screen. Converts a hit-file into a MirDeep blastparsed file and addtionally writes the sequence of the reads into a fasta formated file. This allows to use mirDeep for. I recently done small RNA sequencing of my endocrine tumour samples. I got result analysis with Mirdeep2. I am not master in bioinformatics so, i outsourced . Here, we present an algorithm, miRDeep, which uses a probabilistic model of miRNA biogenesis to score compatibility of the position and frequency of.

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